Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1257

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1256: 9624 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 767980 to 768375 9624 mRNA_1257: 9625 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 768823 to 770242 9625 mRNA_1258: 9626 - Hypothetical Protein, at 770373 to 771317 9626

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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767,910 + 0.3
767,914 - -1.2
768,001 + 0.4
768,011 + -1.6
768,383 - -0.7
768,531 - 0.8
768,537 + -0.7
768,631 + 1.1
768,753 + 0.3
768,768 + -0.5
769,036 - 9625 mRNA_1257 0.15 -0.9
769,095 - 9625 mRNA_1257 0.19 0.8
769,212 + 9625 mRNA_1257 0.27 -0.6
769,362 - 9625 mRNA_1257 0.38 0.8
769,369 + 9625 mRNA_1257 0.38 -0.2
769,371 - 9625 mRNA_1257 0.39 0.4
769,398 - 9625 mRNA_1257 0.40 -0.1
769,450 + 9625 mRNA_1257 0.44 0.3
769,512 - 9625 mRNA_1257 0.49 0.2
769,541 + 9625 mRNA_1257 0.51 1.4
769,692 - 9625 mRNA_1257 0.61 0.0
769,693 + 9625 mRNA_1257 0.61 0.1
769,695 + 9625 mRNA_1257 0.61 -0.5
769,950 + 9625 mRNA_1257 0.79 -0.4
769,983 - 9625 mRNA_1257 0.82 -0.8
770,068 + 9625 mRNA_1257 0.88 -0.2
770,267 + -0.2
770,409 - 0.8