Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1242

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734372 to 735961 9609 mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736191 to 738180 9610 mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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735,255 + 9609 mRNA_1241 0.56 -1.0
735,676 + 9609 mRNA_1241 0.82 0.5
735,884 - -1.2
735,966 - -0.8
736,091 + 0.8
736,098 + -0.3
736,116 - -0.2
736,121 - -0.0
736,121 - -0.5
736,398 - 9610 mRNA_1242 0.10 1.7
736,406 - 9610 mRNA_1242 0.11 -0.6
736,406 - 9610 mRNA_1242 0.11 -2.5
736,406 - 9610 mRNA_1242 0.11 1.7
736,425 - 9610 mRNA_1242 0.12 0.5
736,433 + 9610 mRNA_1242 0.12 -1.4
736,713 - 9610 mRNA_1242 0.26 -0.2
736,846 - 9610 mRNA_1242 0.33 0.7
736,954 - 9610 mRNA_1242 0.38 -0.1
737,261 - 9610 mRNA_1242 0.54 0.1
737,275 + 9610 mRNA_1242 0.54 0.3
737,909 + 9610 mRNA_1242 0.86 -0.2
737,973 - 9610 mRNA_1242 0.90 0.4
737,973 - 9610 mRNA_1242 0.90 -2.1
738,159 + -0.3
738,167 - -0.2
738,170 + -0.0
738,508 - 9611 mRNA_1243 0.22 -0.7