Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1241

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732640 to 733855 9608 mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734372 to 735961 9609 mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736191 to 738180 9610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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733,468 + 9608 mRNA_1240 0.68 0.2
733,597 + 9608 mRNA_1240 0.79 1.0
733,644 + 9608 mRNA_1240 0.83 -0.3
733,684 - 9608 mRNA_1240 0.86 -0.2
733,756 - -0.1
733,758 - -0.6
733,797 + 0.4
733,809 - -0.0
733,896 + 1.2
733,917 - 1.7
734,060 - -1.2
734,173 - -0.7
734,181 + -0.4
734,384 + -0.1
735,067 - 9609 mRNA_1241 0.44 -2.1
735,255 + 9609 mRNA_1241 0.56 -1.0
735,676 + 9609 mRNA_1241 0.82 0.5
735,884 - -1.2
735,966 - -0.8
736,091 + 0.8
736,098 + -0.3
736,116 - -0.2
736,121 - -0.0
736,121 - -0.5
736,398 - 9610 mRNA_1242 0.10 1.7
736,406 - 9610 mRNA_1242 0.11 -0.6
736,406 - 9610 mRNA_1242 0.11 -2.5
736,406 - 9610 mRNA_1242 0.11 1.7
736,425 - 9610 mRNA_1242 0.12 0.5
736,433 + 9610 mRNA_1242 0.12 -1.4
736,713 - 9610 mRNA_1242 0.26 -0.2
736,846 - 9610 mRNA_1242 0.33 0.7
736,954 - 9610 mRNA_1242 0.38 -0.1