Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1220

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1219: 9587 - KOG3202 SNARE protein TLG1/Syntaxin 6, at 675233 to 676117 9587 mRNA_1220: 9588 - KOG0254 Predicted transporter (major facilitator superfamily), at 676707 to 679515 9588 mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679841 to 682126 9589

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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676,192 + -0.7
676,343 + 1.2
676,634 - -0.4
676,650 + 0.9
676,651 - -0.4
676,767 + -0.2
676,773 + -2.1
676,787 + -0.2
676,788 + 0.3
676,928 - -1.0
677,196 - 9588 mRNA_1220 0.17 -0.2
677,349 + 9588 mRNA_1220 0.23 0.0
677,376 + 9588 mRNA_1220 0.24 -0.2
677,627 - 9588 mRNA_1220 0.33 0.0
677,659 + 9588 mRNA_1220 0.34 -0.3
677,671 - 9588 mRNA_1220 0.34 -1.0
677,745 + 9588 mRNA_1220 0.37 0.1
677,768 + 9588 mRNA_1220 0.38 0.9
677,823 + 9588 mRNA_1220 0.40 -1.7
678,193 - 9588 mRNA_1220 0.53 -1.0
678,654 + 9588 mRNA_1220 0.69 -0.2
678,921 + 9588 mRNA_1220 0.79 -0.3
679,053 - 9588 mRNA_1220 0.84 -0.0
679,070 + 9588 mRNA_1220 0.84 0.2
679,177 - 9588 mRNA_1220 0.88 0.7
679,192 + 9588 mRNA_1220 0.88 0.0
679,330 + 0.1
679,365 - 0.9
679,672 + -0.1
679,769 - 1.1
679,770 - 0.4
679,774 - 0.8
679,781 - 2.2
679,791 - 1.4