Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1216

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1216: 9584 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 669963 to 671497 9584 mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672006 to 672875 9585

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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669,139 - -0.9
669,258 - -0.2
669,283 - -1.0
669,324 - -0.9
669,356 + 0.8
669,417 + -0.4
669,452 - -0.7
669,590 - 0.0
669,596 + 0.8
669,608 - -0.4
669,618 - -0.3
669,624 + 0.5
669,625 + 0.7
669,626 - -1.2
669,626 + 0.4
669,694 - 0.5
669,719 + 0.6
669,719 + -0.3
669,729 - -0.2
669,731 - 0.3
669,734 - -0.0
669,734 + 0.9
669,753 - -0.1
669,753 - 0.7
669,887 + 2.5
669,889 - -0.2
670,047 + -0.8
670,054 - -0.7
670,069 + -0.3
670,164 + 9584 mRNA_1216 0.13 0.3
670,499 - 9584 mRNA_1216 0.35 -0.9
670,692 + 9584 mRNA_1216 0.47 1.0
670,921 - 9584 mRNA_1216 0.62 -0.2
671,072 - 9584 mRNA_1216 0.72 -0.2
671,466 - -0.3
672,064 - 0.2
672,149 - 9585 mRNA_1217 0.16 -0.5
672,446 + 9585 mRNA_1217 0.51 -0.9