Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1185

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552 mRNA_1185: 9553 - KOG1399 Flavin-containing monooxygenase, at 601404 to 603765 9553 mRNA_1186: 9554 - K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1, at 603862 to 607168 9554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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600,433 + 9552 mRNA_1184 0.67 -0.2
600,561 - 9552 mRNA_1184 0.75 0.1
600,741 - 9552 mRNA_1184 0.86 0.2
600,893 + 0.0
601,052 - 0.2
601,147 - -0.5
601,176 + 0.8
601,177 + 0.2
601,186 + 1.7
601,197 - -0.7
601,204 + 0.1
601,205 + 0.5
601,211 - -0.9
601,217 - 0.3
601,359 + -0.3
601,502 - -0.5
601,519 + 0.3
601,610 - 1.8
601,705 - 9553 mRNA_1185 0.13 -0.0
601,792 + 9553 mRNA_1185 0.16 0.0
601,840 + 9553 mRNA_1185 0.18 0.8
601,917 - 9553 mRNA_1185 0.22 -1.1
602,125 + 9553 mRNA_1185 0.31 0.6
602,184 - 9553 mRNA_1185 0.33 0.2
602,221 - 9553 mRNA_1185 0.35 0.4
602,226 - 9553 mRNA_1185 0.35 -0.6
602,531 - 9553 mRNA_1185 0.48 -1.4
602,718 + 9553 mRNA_1185 0.56 0.3
602,908 + 9553 mRNA_1185 0.64 1.0
602,911 - 9553 mRNA_1185 0.64 1.0
602,920 - 9553 mRNA_1185 0.64 -0.2
602,979 - 9553 mRNA_1185 0.67 0.1
602,989 + 9553 mRNA_1185 0.67 -0.8
603,066 + 9553 mRNA_1185 0.70 0.0
603,262 - 9553 mRNA_1185 0.79 -0.4
603,282 - 9553 mRNA_1185 0.80 -0.0
603,283 - 9553 mRNA_1185 0.80 -0.7
603,283 - 9553 mRNA_1185 0.80 1.1
603,304 + 9553 mRNA_1185 0.80 -1.2
603,414 - 9553 mRNA_1185 0.85 0.4
603,426 - 9553 mRNA_1185 0.86 0.9
603,526 - 9553 mRNA_1185 0.90 -0.0
603,565 - 1.2
603,697 - -0.5
603,752 + 0.4
604,074 + -0.7
604,101 - -0.1
604,351 + 9554 mRNA_1186 0.15 -0.1
604,465 - 9554 mRNA_1186 0.18 -0.8