Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1156

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1155: 9523 - ProSiteProfiles-CBS domain profile.-PS51371,SUPERFAMILY--SSF54631, at 528482 to 529504 9523 mRNA_1156: 9524 - Hypothetical Protein, at 530031 to 531445 9524 mRNA_1157: 9525 - K14818 SQT1 ribosome assembly protein SQT1, at 531850 to 533484 9525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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529,112 - 9523 mRNA_1155 0.62 -1.3
529,114 + 9523 mRNA_1155 0.62 0.7
529,237 + 9523 mRNA_1155 0.74 -0.3
529,411 + 0.5
529,541 + 0.8
529,544 - -0.9
529,547 + -1.1
529,547 + 0.2
529,565 + -0.1
529,661 + 0.8
529,722 + 0.9
529,854 - 1.6
529,871 + -0.6
529,874 + 1.0
529,885 + 0.4
530,004 - -0.6
530,176 - 9524 mRNA_1156 0.10 0.2
530,183 + 9524 mRNA_1156 0.11 1.4
530,183 + 9524 mRNA_1156 0.11 0.1
530,331 - 9524 mRNA_1156 0.21 -0.0
530,466 - 9524 mRNA_1156 0.31 0.1
530,513 - 9524 mRNA_1156 0.34 -0.6
530,688 + 9524 mRNA_1156 0.46 -0.5
530,766 + 9524 mRNA_1156 0.52 0.8
531,050 - 9524 mRNA_1156 0.72 -0.1
531,064 + 9524 mRNA_1156 0.73 -0.2
531,187 + 9524 mRNA_1156 0.82 0.1
531,194 + 9524 mRNA_1156 0.82 -0.0
531,288 - 9524 mRNA_1156 0.89 0.3
531,332 - 1.4
531,337 - -0.2
531,442 - -0.6
531,459 - 0.5
531,477 + -1.3
531,486 + 0.2
531,498 + -0.2
531,624 - -0.9
531,628 - 0.6
531,632 + -0.9
531,633 - -1.7
531,642 + 0.3
531,651 + -0.5