Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1140

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499455 to 501152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364 9508 mRNA_1141: 9509 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 502606 to 503454 9509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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500,526 + 9507 mRNA_1139 0.63 -1.0
500,934 - 9507 mRNA_1139 0.87 0.4
501,104 + -0.0
501,115 + -1.9
501,514 + 9508 mRNA_1140 0.30 -0.7
501,645 + 9508 mRNA_1140 0.41 1.3
501,657 - 9508 mRNA_1140 0.42 1.1
501,665 + 9508 mRNA_1140 0.43 -1.6
501,711 - 9508 mRNA_1140 0.46 0.0
501,725 + 9508 mRNA_1140 0.48 -0.4
501,819 + 9508 mRNA_1140 0.55 -0.4
501,830 - 9508 mRNA_1140 0.56 2.1
501,948 - 9508 mRNA_1140 0.66 -0.4
501,979 - 9508 mRNA_1140 0.68 -1.7
501,980 - 9508 mRNA_1140 0.68 -0.5
502,126 + 9508 mRNA_1140 0.80 -0.7
502,134 - 9508 mRNA_1140 0.81 0.5
502,139 + 9508 mRNA_1140 0.81 0.6
502,238 - 9508 mRNA_1140 0.90 0.2
502,239 - 9508 mRNA_1140 0.90 1.9
502,243 - 1.4
502,398 + 0.6
502,400 - 0.5
502,407 + 0.0
502,420 - -0.5
502,424 + -1.4
502,424 + -1.0
502,425 - 0.8
502,431 + -1.0
502,435 - -0.2
502,440 + 0.1
502,446 + 0.2
502,726 - 9509 mRNA_1141 0.14 0.4
503,043 + 9509 mRNA_1141 0.51 0.4
503,286 - 9509 mRNA_1141 0.80 -0.2