Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1139

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495296 to 498898 9506 mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499455 to 501152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364 9508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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498,904 + -0.3
498,905 - 0.9
499,015 - -0.6
499,031 + -0.2
499,042 + -0.0
499,058 - 1.1
499,059 - -0.3
499,063 + -0.1
499,090 + 1.2
499,169 - -0.7
499,182 + -0.2
499,276 + 0.3
499,377 + -1.0
499,503 - -0.1
499,504 - -0.2
499,523 + 1.7
499,795 - 9507 mRNA_1139 0.20 -0.0
500,526 + 9507 mRNA_1139 0.63 -1.0
500,934 - 9507 mRNA_1139 0.87 0.4
501,104 + -0.0
501,115 + -1.9
501,514 + 9508 mRNA_1140 0.30 -0.7
501,645 + 9508 mRNA_1140 0.41 1.3
501,657 - 9508 mRNA_1140 0.42 1.1
501,665 + 9508 mRNA_1140 0.43 -1.6
501,711 - 9508 mRNA_1140 0.46 0.0
501,725 + 9508 mRNA_1140 0.48 -0.4
501,819 + 9508 mRNA_1140 0.55 -0.4
501,830 - 9508 mRNA_1140 0.56 2.1
501,948 - 9508 mRNA_1140 0.66 -0.4
501,979 - 9508 mRNA_1140 0.68 -1.7
501,980 - 9508 mRNA_1140 0.68 -0.5
502,126 + 9508 mRNA_1140 0.80 -0.7
502,134 - 9508 mRNA_1140 0.81 0.5
502,139 + 9508 mRNA_1140 0.81 0.6