Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1128

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495 mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496 mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476023 to 479289 9497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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470,633 - 9495 mRNA_1127 0.88 -0.5
470,676 + 9495 mRNA_1127 0.89 -0.8
470,689 + 9495 mRNA_1127 0.90 1.8
470,770 - 0.8
470,934 + 0.6
471,228 - -1.7
471,231 + 1.0
471,233 - -0.3
471,234 - -0.2
471,240 - -0.0
471,253 + 0.4
471,384 - 0.1
471,409 - 1.2
471,421 + 0.2
471,535 + 0.6
471,569 - 0.1
471,588 + 0.5
471,588 + 1.1
471,599 + -0.0
471,601 - -0.0
471,731 - 0.0
471,844 - 9496 mRNA_1128 0.11 -1.6
471,912 - 9496 mRNA_1128 0.12 1.1
472,262 + 9496 mRNA_1128 0.20 0.5
472,278 - 9496 mRNA_1128 0.21 0.1
472,499 - 9496 mRNA_1128 0.25 -0.2
472,563 + 9496 mRNA_1128 0.27 -0.4
472,616 + 9496 mRNA_1128 0.28 0.7
472,774 + 9496 mRNA_1128 0.32 0.3
472,933 + 9496 mRNA_1128 0.35 -0.1
473,215 - 9496 mRNA_1128 0.41 1.0
473,234 + 9496 mRNA_1128 0.42 0.0
473,466 - 9496 mRNA_1128 0.47 0.0
473,572 + 9496 mRNA_1128 0.49 0.1
473,931 - 9496 mRNA_1128 0.57 -0.4
473,948 + 9496 mRNA_1128 0.58 -0.4
474,227 + 9496 mRNA_1128 0.64 -1.3
474,243 - 9496 mRNA_1128 0.64 -0.9
474,244 - 9496 mRNA_1128 0.64 0.0
474,949 + 9496 mRNA_1128 0.80 0.0
475,057 + 9496 mRNA_1128 0.82 0.4
475,127 - 9496 mRNA_1128 0.84 0.3
475,402 + 9496 mRNA_1128 0.90 -0.4
475,680 + -0.9
475,815 - 0.5
475,862 + 0.4
476,143 - 0.0
476,356 + 9497 mRNA_1129 0.10 0.1
476,754 - 9497 mRNA_1129 0.22 0.9