Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1111

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478 mRNA_1111: 9479 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 430146 to 432940 9479 mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433263 to 434310 9480

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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429,176 + 9478 mRNA_1110 0.47 -1.0
429,351 + 9478 mRNA_1110 0.60 0.2
429,527 - 9478 mRNA_1110 0.72 0.2
429,737 - 9478 mRNA_1110 0.87 -0.2
429,758 - 9478 mRNA_1110 0.89 0.0
429,919 + -1.5
429,920 - -0.1
430,032 - -1.7
430,035 - 1.0
430,038 + -0.0
430,047 + -0.2
430,047 + 0.7
430,054 + -0.2
430,074 - 0.2
430,226 + 0.0
430,229 - 0.1
430,229 - 0.4
430,344 - -0.1
430,348 - -0.1
430,350 - 0.1
430,351 + 0.0
430,467 - 9479 mRNA_1111 0.11 0.1
430,485 - 9479 mRNA_1111 0.12 -0.4
430,498 + 9479 mRNA_1111 0.13 -0.3
430,614 + 9479 mRNA_1111 0.17 -1.6
430,655 + 9479 mRNA_1111 0.18 0.0
430,670 - 9479 mRNA_1111 0.19 1.2
430,730 + 9479 mRNA_1111 0.21 -0.5
430,812 + 9479 mRNA_1111 0.24 -0.4
430,930 - 9479 mRNA_1111 0.28 -0.4
430,932 - 9479 mRNA_1111 0.28 -0.3
431,643 - 9479 mRNA_1111 0.54 0.8
431,802 + 9479 mRNA_1111 0.59 -0.3
431,954 - 9479 mRNA_1111 0.65 0.9
432,231 + 9479 mRNA_1111 0.75 0.2
432,353 + 9479 mRNA_1111 0.79 0.0
432,636 - 9479 mRNA_1111 0.89 0.4
432,689 - 0.6
432,794 + -0.3
432,813 + 0.8
432,948 + -0.2
433,092 - -0.2
433,096 - 0.4
433,252 - -0.1
433,267 + 0.6
433,267 - 0.5
433,381 - 9480 mRNA_1112 0.11 0.9
433,388 - 9480 mRNA_1112 0.12 -0.4
433,399 + 9480 mRNA_1112 0.13 1.5
433,401 + 9480 mRNA_1112 0.13 -0.2
433,406 + 9480 mRNA_1112 0.14 -0.9
433,413 + 9480 mRNA_1112 0.14 0.5
433,492 - 9480 mRNA_1112 0.22 2.4
433,537 + 9480 mRNA_1112 0.26 0.6
433,541 - 9480 mRNA_1112 0.27 0.1
433,687 + 9480 mRNA_1112 0.40 0.1
433,688 - 9480 mRNA_1112 0.41 1.6
433,697 + 9480 mRNA_1112 0.41 0.0
433,705 - 9480 mRNA_1112 0.42 0.0