Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1102

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1101: 9469 - KOG1206 Peroxisomal multifunctional beta-oxidation protein and related enzymes, at 405793 to 407272 9469 mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407441 to 409508 9470 mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410090 to 412457 9471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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406,466 - 9469 mRNA_1101 0.45 -0.1
406,488 + 9469 mRNA_1101 0.47 0.5
406,936 - 9469 mRNA_1101 0.77 -0.0
406,937 - 9469 mRNA_1101 0.77 -0.2
407,066 + 9469 mRNA_1101 0.86 -0.2
407,133 - -1.9
407,177 - -1.3
407,195 + -0.6
407,328 - 1.7
407,785 - 9470 mRNA_1102 0.17 0.3
407,893 + 9470 mRNA_1102 0.22 0.8
407,968 + 9470 mRNA_1102 0.25 0.5
408,058 + 9470 mRNA_1102 0.30 2.0
408,064 + 9470 mRNA_1102 0.30 0.2
408,445 - 9470 mRNA_1102 0.49 0.3
408,508 - 9470 mRNA_1102 0.52 0.3
408,521 - 9470 mRNA_1102 0.52 0.6
408,780 - 9470 mRNA_1102 0.65 -0.0
408,801 + 9470 mRNA_1102 0.66 0.9
408,902 + 9470 mRNA_1102 0.71 0.8
409,107 + 9470 mRNA_1102 0.81 -0.2
409,223 + 9470 mRNA_1102 0.86 -0.2
409,230 + 9470 mRNA_1102 0.87 0.1
409,513 + 0.2
409,771 - -0.9
409,790 + 0.4
409,800 - 0.1
409,827 + 0.6
409,907 + -0.7
409,935 + 0.9
409,966 - 0.1
410,045 - 0.1
410,046 + 0.4
410,105 + -1.3
410,384 - 9471 mRNA_1103 0.12 -0.6
410,402 + 9471 mRNA_1103 0.13 -0.3