Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1089

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1088: 9456 - KOG3179 Predicted glutamine synthetase, at 380129 to 381362 9456 mRNA_1089: 9457 - K01638 aceB, glcB malate synthase, at 381522 to 383960 9457 mRNA_1090: 9458 - K12393 AP1M AP-1 complex subunit mu, at 384249 to 386320 9458

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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380,629 - 9456 mRNA_1088 0.41 0.2
381,055 - 9456 mRNA_1088 0.75 -0.9
381,182 - 9456 mRNA_1088 0.85 -0.9
381,231 + 9456 mRNA_1088 0.89 0.1
381,239 + -0.5
381,338 + 0.7
381,342 - 0.3
381,356 + -0.7
381,373 + 1.4
381,427 + 0.3
381,448 + -0.2
381,458 + 1.1
381,472 - 0.7
381,597 - 0.5
381,619 + 1.1
381,621 + -2.0
381,642 + 0.1
381,652 + -0.5
381,749 + -0.4
381,763 + 1.8
381,861 - 9457 mRNA_1089 0.14 -0.1
381,921 - 9457 mRNA_1089 0.16 0.6
382,196 + 9457 mRNA_1089 0.28 1.0
382,202 + 9457 mRNA_1089 0.28 -1.3
382,496 + 9457 mRNA_1089 0.40 1.4
382,539 + 9457 mRNA_1089 0.42 0.5
382,540 - 9457 mRNA_1089 0.42 -0.1
382,613 - 9457 mRNA_1089 0.45 0.9
382,796 + 9457 mRNA_1089 0.52 1.0
382,799 - 9457 mRNA_1089 0.52 -0.4
382,888 - 9457 mRNA_1089 0.56 0.2
382,940 + 9457 mRNA_1089 0.58 -0.4
383,363 + 9457 mRNA_1089 0.75 0.1
383,548 + 9457 mRNA_1089 0.83 0.5
383,689 - 9457 mRNA_1089 0.89 0.1
383,778 + -0.3
383,807 - -1.0
383,815 + -0.6
384,074 - -0.4