Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1068

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1067: 9435 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 323098 to 325825 9435 mRNA_1068: 9436 - Hypothetical Protein, at 325989 to 327863 9436 mRNA_1069: 9437 - K11267 PDS5 sister chromatid cohesion protein PDS5, at 327960 to 333301 9437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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325,306 + 9435 mRNA_1067 0.81 -0.4
325,636 + 0.5
325,686 - -0.7
325,791 - -0.5
325,859 + 0.9
325,885 + -0.1
325,905 + -1.5
325,909 + 0.1
325,932 + 0.4
326,030 - -0.0
326,040 - -0.1
326,045 + 0.1
326,072 - -0.0
326,073 + 0.2
326,175 - -1.1
326,194 - 9436 mRNA_1068 0.11 -0.7
326,204 + 9436 mRNA_1068 0.11 -1.1
326,216 - 9436 mRNA_1068 0.12 0.4
326,220 - 9436 mRNA_1068 0.12 0.4
326,346 - 9436 mRNA_1068 0.19 0.3
326,490 - 9436 mRNA_1068 0.27 1.3
327,222 - 9436 mRNA_1068 0.66 0.5
327,346 - 9436 mRNA_1068 0.72 -1.4
327,370 - 9436 mRNA_1068 0.74 -0.2
327,538 - 9436 mRNA_1068 0.83 -0.6
327,847 - -0.3
327,894 - -0.2