Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1062

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308503 to 311284 9429 mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311379 to 314968 9430 mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315591 to 316093 9431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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310,578 - 9429 mRNA_1061 0.75 0.2
310,646 - 9429 mRNA_1061 0.77 -0.5
310,646 - 9429 mRNA_1061 0.77 0.3
310,665 + 9429 mRNA_1061 0.78 -1.3
310,707 - 9429 mRNA_1061 0.79 -0.9
310,752 - 9429 mRNA_1061 0.81 0.5
310,755 - 9429 mRNA_1061 0.81 1.6
310,758 + 9429 mRNA_1061 0.81 -0.6
310,767 + 9429 mRNA_1061 0.81 -0.1
310,971 + 9429 mRNA_1061 0.89 1.1
311,062 + 0.9
311,217 + 0.4
311,349 + 0.3
311,349 - -1.2
311,372 + 0.5
311,393 + 1.1
311,905 - 9430 mRNA_1062 0.15 0.3
312,482 + 9430 mRNA_1062 0.31 0.2
312,536 + 9430 mRNA_1062 0.32 0.3
312,913 + 9430 mRNA_1062 0.43 -0.3
312,918 - 9430 mRNA_1062 0.43 -0.1
312,979 - 9430 mRNA_1062 0.45 -0.2
313,090 + 9430 mRNA_1062 0.48 -0.7
313,134 + 9430 mRNA_1062 0.49 -0.9
313,215 - 9430 mRNA_1062 0.51 0.0
313,227 - 9430 mRNA_1062 0.51 -0.0
313,238 - 9430 mRNA_1062 0.52 -0.5
313,315 + 9430 mRNA_1062 0.54 1.3
313,420 + 9430 mRNA_1062 0.57 -1.9
313,459 + 9430 mRNA_1062 0.58 -0.4
313,471 + 9430 mRNA_1062 0.58 1.0
313,497 + 9430 mRNA_1062 0.59 0.5
313,510 + 9430 mRNA_1062 0.59 0.1
313,692 + 9430 mRNA_1062 0.64 -0.6
313,960 - 9430 mRNA_1062 0.72 0.3
314,187 - 9430 mRNA_1062 0.78 -0.8
314,568 + 9430 mRNA_1062 0.89 0.3
314,610 + -1.0
314,611 - -0.1
314,716 + 0.3
314,833 + -1.9
314,883 - -0.0
314,890 + 0.2
315,026 + -0.4
315,036 + -0.1
315,120 + 0.2
315,148 + 0.4
315,255 - -0.6
315,290 - -0.1
315,416 + -0.5
315,448 + 0.3
315,557 + 0.1
315,702 - 9431 mRNA_1063 0.22 -0.9
315,705 + 9431 mRNA_1063 0.23 1.1
315,855 - 9431 mRNA_1063 0.52 -0.2
315,881 + 9431 mRNA_1063 0.58 -0.6