Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1033

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1032: 9400 - Hypothetical Protein, at 245028 to 245336 9400 mRNA_1033: 9401 - KOG4653 Uncharacterized conserved protein, at 245440 to 249406 9401 mRNA_1034: 9402 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 249444 to 250770 9402

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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244,470 + 0.4
244,515 + 1.1
244,528 - -1.0
244,541 - -0.2
244,543 - -1.3
244,847 + 1.1
244,987 + -1.3
244,992 + 0.2
244,994 + -0.3
244,995 - 0.7
245,246 - 9400 mRNA_1032 0.71 0.6
245,264 - 9400 mRNA_1032 0.76 -0.9
245,287 - 9400 mRNA_1032 0.84 -0.8
245,312 + -1.3
245,385 + 0.6
245,403 - -0.4
245,432 + -1.2
245,433 - -0.7
245,433 - -0.6
245,440 + 0.3
247,301 + 9401 mRNA_1033 0.47 0.3
247,894 + 9401 mRNA_1033 0.62 0.1
248,116 - 9401 mRNA_1033 0.67 -0.4
250,187 - 9402 mRNA_1034 0.56 -0.2
250,244 + 9402 mRNA_1034 0.60 -2.2