Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1009

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193375 to 193873 9376 mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194159 to 197453 9377 mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198113 to 201234 9378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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193,240 - -0.1
193,418 + -0.9
193,652 - 9376 mRNA_1008 0.56 1.0
193,652 - 9376 mRNA_1008 0.56 0.4
193,668 - 9376 mRNA_1008 0.59 0.6
193,680 + 9376 mRNA_1008 0.61 1.0
193,806 - 9376 mRNA_1008 0.86 0.4
193,830 - 0.3
193,832 + -0.9
193,950 - 1.0
193,953 - 0.5
193,963 - 0.1
193,965 - 0.4
193,971 + -0.2
193,971 - 0.5
193,974 - -0.3
193,974 - -0.7
193,975 + 1.0
193,978 - -0.0
193,988 - 0.3
193,990 + -0.5
194,000 + -0.9
194,104 + 0.1
194,109 - -0.6
194,110 + 0.7
194,112 - 0.0
194,140 + 0.7
194,231 + 0.2
194,236 + -0.6
194,255 - 0.5
194,396 + -0.3
194,402 - -0.8
194,426 - 2.0
194,575 + 9377 mRNA_1009 0.13 -1.2
194,576 + 9377 mRNA_1009 0.13 -0.0
195,021 + 9377 mRNA_1009 0.26 1.1
195,179 + 9377 mRNA_1009 0.31 -0.7
195,323 + 9377 mRNA_1009 0.35 -0.5
195,497 + 9377 mRNA_1009 0.41 -0.1
195,593 + 9377 mRNA_1009 0.44 0.3
195,747 + 9377 mRNA_1009 0.48 -0.2
195,921 + 9377 mRNA_1009 0.53 -0.5
196,047 + 9377 mRNA_1009 0.57 -0.3
196,239 + 9377 mRNA_1009 0.63 -0.3
196,327 + 9377 mRNA_1009 0.66 1.0
196,328 - 9377 mRNA_1009 0.66 -1.4
196,352 + 9377 mRNA_1009 0.67 -0.7
196,397 - 9377 mRNA_1009 0.68 -0.0
196,460 - 9377 mRNA_1009 0.70 -1.9
196,605 - 9377 mRNA_1009 0.74 0.4
196,653 + 9377 mRNA_1009 0.76 -0.8
196,905 - 9377 mRNA_1009 0.83 -0.2
197,059 - 9377 mRNA_1009 0.88 1.1
197,078 - 9377 mRNA_1009 0.89 1.7
197,224 + -0.1
197,237 - 0.1
197,345 + -0.3
197,449 - -0.1
197,506 - -0.7