Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1001

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171507 to 175243 9368 mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175417 to 177383 9369 mRNA_1002: 9370 - KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37, at 177946 to 178405 9370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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174,840 - 9368 mRNA_1000 0.89 1.9
174,847 + 9368 mRNA_1000 0.89 -0.9
174,873 - 0.8
174,880 + -0.3
174,981 - 0.6
175,107 - 0.3
175,644 + 9369 mRNA_1001 0.12 0.0
175,675 - 9369 mRNA_1001 0.13 -0.6
175,697 - 9369 mRNA_1001 0.14 -0.6
175,794 + 9369 mRNA_1001 0.19 0.5
176,105 - 9369 mRNA_1001 0.35 -0.2
176,143 + 9369 mRNA_1001 0.37 0.3
176,251 + 9369 mRNA_1001 0.42 -1.2
176,460 + 9369 mRNA_1001 0.53 0.0
176,464 - 9369 mRNA_1001 0.53 0.6
176,581 + 9369 mRNA_1001 0.59 0.6
176,695 - 9369 mRNA_1001 0.65 -1.1
176,707 + 9369 mRNA_1001 0.66 -0.8
176,877 - 9369 mRNA_1001 0.74 0.1
176,880 + 9369 mRNA_1001 0.74 -0.7
177,002 - 9369 mRNA_1001 0.81 -1.1
177,021 + 9369 mRNA_1001 0.82 -0.2
177,677 + -0.5
177,854 - 0.7