Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_880

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_879: 9247 - K12412 MCM1 pheromone receptor transcription factor, at 2099747 to 2101589 9247 mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2101842 to 2104437 9248 mRNA_881: 9249 - KOG4626 O-linked N-acetylglucosamine transferase OGT, at 2104561 to 2105712 9249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,101,110 - 9247 mRNA_879 0.74 0.6
2,101,167 + 9247 mRNA_879 0.77 1.3
2,101,226 + 9247 mRNA_879 0.80 -1.3
2,101,234 + 9247 mRNA_879 0.81 0.0
2,101,351 + 9247 mRNA_879 0.87 0.4
2,101,366 + 9247 mRNA_879 0.88 -0.0
2,101,502 - 0.0
2,101,798 - -1.1
2,101,902 - 1.2
2,101,914 + 0.6
2,101,938 - -1.4
2,101,938 - 0.6
2,101,938 - 0.2
2,101,964 + 0.1
2,102,073 - -0.5
2,102,079 - -0.6
2,102,085 + 0.3
2,102,228 + 9248 mRNA_880 0.15 -0.7
2,102,665 + 9248 mRNA_880 0.32 -0.2
2,103,661 - 9248 mRNA_880 0.70 -0.1
2,103,716 + 9248 mRNA_880 0.72 -1.6
2,103,836 + 9248 mRNA_880 0.77 -1.5
2,105,307 - 9249 mRNA_881 0.65 -0.5