Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_859

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_858: 9226 - K10599 PRPF19, PRP19 pre-mRNA-processing factor 19, at 2055879 to 2057799 9226 mRNA_859: 9227 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 2057980 to 2061220 9227 mRNA_860: 9228 - HMMPfam-PX domain-PF00787,HMMPfam-BAR domain-PF03114,ProSiteProfiles-PX domain profile.-PS50195,SMART-PhoX homologous domain, present in p47phox and p40phox.-SM00312,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF64268, at 2061433 to 2063574 9228

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,057,014 - 9226 mRNA_858 0.59 1.9
2,057,729 + 1.3
2,057,825 - 0.1
2,057,879 - -0.2
2,057,898 - -0.3
2,057,902 + -0.2
2,057,905 - -0.3
2,057,912 - 0.3
2,058,032 + 0.4
2,058,043 - -0.1
2,058,048 - 0.1
2,058,064 + -1.3
2,058,105 - 0.1
2,058,507 - 9227 mRNA_859 0.16 0.3
2,058,811 - 9227 mRNA_859 0.26 0.1
2,059,244 + 9227 mRNA_859 0.39 -0.3
2,059,799 - 9227 mRNA_859 0.56 -0.0
2,059,832 + 9227 mRNA_859 0.57 -0.5
2,059,834 - 9227 mRNA_859 0.57 -0.6
2,059,978 + 9227 mRNA_859 0.62 -0.5
2,059,995 + 9227 mRNA_859 0.62 -1.2
2,060,398 + 9227 mRNA_859 0.75 -0.3
2,060,541 - 9227 mRNA_859 0.79 0.0
2,060,593 + 9227 mRNA_859 0.81 2.2
2,060,696 - 9227 mRNA_859 0.84 0.2
2,060,704 + 9227 mRNA_859 0.84 0.3
2,060,781 - 9227 mRNA_859 0.86 0.8
2,060,785 + 9227 mRNA_859 0.87 -0.7
2,060,838 - 9227 mRNA_859 0.88 -0.1
2,060,868 + 9227 mRNA_859 0.89 1.2
2,060,876 + 9227 mRNA_859 0.89 -0.2
2,061,055 + -1.0
2,061,068 - 0.5
2,061,121 - -0.4
2,061,149 - 0.6
2,061,163 + -0.0
2,061,218 - -0.9
2,061,328 - -0.5
2,061,446 + 0.2
2,061,587 + 0.7
2,061,908 + 9228 mRNA_860 0.22 0.1
2,062,160 + 9228 mRNA_860 0.34 -0.3