Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_855

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_854: 9222 - K01620 ltaE threonine aldolase, at 2045445 to 2046969 9222 mRNA_855: 9223 - BLAST Phosphoribosyltransferase C-terminal [Ceraceosorus bo..., at 2047256 to 2049795 9223 mRNA_856: 9224 - KOG0828 Predicted E3 ubiquitin ligase, at 2049968 to 2053108 9224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,046,627 + 9222 mRNA_854 0.78 -1.4
2,046,634 + 9222 mRNA_854 0.78 -0.7
2,046,769 - 9222 mRNA_854 0.87 -0.1
2,046,918 + -0.5
2,046,920 - -0.2
2,047,031 - -0.6
2,047,031 - 0.5
2,047,080 - 1.3
2,047,087 + -0.0
2,047,090 + -0.3
2,047,096 + -0.2
2,047,105 + -1.2
2,047,116 - 0.0
2,047,157 - 0.5
2,047,198 - 0.4
2,047,399 - 0.5
2,047,691 - 9223 mRNA_855 0.17 -0.5
2,047,946 + 9223 mRNA_855 0.27 -0.3
2,048,393 + 9223 mRNA_855 0.45 -0.2
2,048,551 + 9223 mRNA_855 0.51 0.4
2,048,690 - 9223 mRNA_855 0.56 -0.3
2,048,972 - 9223 mRNA_855 0.68 -0.3
2,049,130 + 9223 mRNA_855 0.74 -1.1
2,049,139 - 9223 mRNA_855 0.74 0.2
2,049,283 - 9223 mRNA_855 0.80 -0.5
2,049,449 + 9223 mRNA_855 0.86 -0.0
2,049,519 + 9223 mRNA_855 0.89 -0.1
2,049,555 - -0.7
2,049,566 + -0.4
2,049,594 + -0.6
2,049,716 - 0.1
2,049,732 - -1.1
2,049,740 - -1.2
2,049,865 + -0.6
2,049,879 + -0.4
2,050,769 + 9224 mRNA_856 0.26 -0.4