Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_827

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_826: 9194 - HMMPfam-T-complex protein 11-PF05794, at 1977026 to 1979152 9194 mRNA_827: 9195 - Hypothetical Protein, at 1979229 to 1980332 9195 mRNA_828: 9196 - HMMPfam-Protein of unknown function (DUF2420)-PF10336, at 1980858 to 1983509 9196

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,978,313 - 9194 mRNA_826 0.61 -0.3
1,978,562 + 9194 mRNA_826 0.72 -0.2
1,978,583 - 9194 mRNA_826 0.73 -0.2
1,978,624 - 9194 mRNA_826 0.75 0.3
1,978,660 + 9194 mRNA_826 0.77 -1.7
1,978,760 - 9194 mRNA_826 0.82 -0.1
1,978,875 - 9194 mRNA_826 0.87 -0.7
1,978,896 + 9194 mRNA_826 0.88 0.5
1,978,953 - -0.8
1,978,970 + 0.7
1,979,039 - 0.2
1,979,063 + -1.1
1,979,082 + 0.6
1,979,108 - 1.1
1,979,133 - -0.7
1,979,140 + -0.5
1,979,174 - 0.2
1,979,358 + 9195 mRNA_827 0.12 1.3
1,979,956 - 9195 mRNA_827 0.66 -0.4
1,980,069 - 9195 mRNA_827 0.76 -0.8
1,980,080 + 9195 mRNA_827 0.77 -0.1
1,980,177 - 9195 mRNA_827 0.86 -1.3
1,980,233 - -1.0
1,980,244 + -0.7
1,980,355 - -1.2
1,980,368 - -0.4
1,980,369 + 0.6
1,980,375 + 0.0
1,980,377 + -0.6
1,980,399 - -1.2
1,980,442 + -0.6
1,980,442 - 0.6
1,980,442 - 1.2
1,980,508 + 0.2
1,980,512 - -0.3
1,980,524 - 0.8
1,980,538 + 0.7
1,980,553 - -0.4
1,980,556 - -0.5
1,980,574 - -0.2
1,980,632 - -1.1
1,980,666 - -0.4
1,980,678 - 0.6
1,980,797 - -0.3
1,980,833 - 0.1