Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_818

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1948708 to 1950488 9185 mRNA_818: 9186 - HMMPfam-PQ loop repeat-PF04193, at 1950647 to 1952582 9186 mRNA_819: 9187 - KOG1810 Cell cycle-associated protein, at 1953151 to 1958497 9187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,950,009 + 9185 mRNA_817 0.73 0.9
1,950,352 + -0.1
1,950,612 + 0.3
1,951,205 - 9186 mRNA_818 0.29 -0.2
1,951,254 - 9186 mRNA_818 0.31 1.7
1,951,486 - 9186 mRNA_818 0.43 0.3
1,951,515 + 9186 mRNA_818 0.45 -2.5
1,952,053 + 9186 mRNA_818 0.73 -1.5
1,952,774 - 0.3
1,952,808 + 1.0
1,953,094 + -0.4
1,953,104 + 0.2
1,953,108 + -1.2
1,953,125 + 0.6
1,953,228 - -0.6
1,953,420 + 1.3
1,953,423 + 1.4
1,953,429 + 0.2