Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_758

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_757: 9125 - K01493 comEB dCMP deaminase, at 1804262 to 1807266 9125 mRNA_758: 9126 - K20404 DEPDC5 DEP domain-containing protein 5, at 1807319 to 1813069 9126 mRNA_759: 9127 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1813341 to 1815378 9127

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,806,440 + 9125 mRNA_757 0.72 0.1
1,806,770 - 9125 mRNA_757 0.83 0.7
1,807,142 - 1.2
1,807,169 + -0.5
1,807,317 - 0.3
1,807,392 + 0.0
1,808,184 + 9126 mRNA_758 0.15 0.2
1,808,521 + 9126 mRNA_758 0.21 -0.5
1,808,778 - 9126 mRNA_758 0.25 0.3
1,808,786 + 9126 mRNA_758 0.26 -0.6
1,809,238 - 9126 mRNA_758 0.33 -1.0
1,809,242 + 9126 mRNA_758 0.33 0.5
1,809,357 - 9126 mRNA_758 0.35 0.3
1,809,373 + 9126 mRNA_758 0.36 -1.3
1,809,385 + 9126 mRNA_758 0.36 0.4
1,809,604 + 9126 mRNA_758 0.40 0.0
1,809,898 - 9126 mRNA_758 0.45 0.2
1,810,040 + 9126 mRNA_758 0.47 0.4
1,810,105 - 9126 mRNA_758 0.48 -0.1
1,810,105 - 9126 mRNA_758 0.48 1.8
1,810,320 - 9126 mRNA_758 0.52 0.0
1,810,331 + 9126 mRNA_758 0.52 -0.2
1,810,504 - 9126 mRNA_758 0.55 0.6
1,810,506 + 9126 mRNA_758 0.55 0.3
1,810,641 + 9126 mRNA_758 0.58 -0.3
1,810,655 + 9126 mRNA_758 0.58 -1.5
1,811,047 - 9126 mRNA_758 0.65 0.6
1,811,100 + 9126 mRNA_758 0.66 -0.5
1,811,507 + 9126 mRNA_758 0.73 -1.2
1,811,795 + 9126 mRNA_758 0.78 0.6
1,811,938 - 9126 mRNA_758 0.80 -0.5
1,812,011 + 9126 mRNA_758 0.82 -0.4
1,812,113 + 9126 mRNA_758 0.83 -0.1
1,812,373 - 9126 mRNA_758 0.88 0.5
1,812,499 - 0.9
1,812,532 + 2.5
1,812,619 - -0.7
1,812,658 - 1.5
1,812,671 - -0.0
1,812,677 + 1.1
1,812,679 - -0.3
1,812,809 - 1.2
1,812,822 + -0.0
1,812,826 - 0.3
1,812,827 - -0.2
1,812,845 + 0.6
1,812,974 - -0.3
1,812,993 + 1.0
1,813,101 - -0.1
1,813,120 - -1.1
1,813,134 - -0.1
1,813,143 + 0.1
1,813,722 - 9127 mRNA_759 0.19 1.4