Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_640

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1534937 to 1536294 9007 mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1536476 to 1538269 9008 mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1538392 to 1544328 9009

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,535,598 + 9007 mRNA_639 0.49 0.4
1,535,710 - 9007 mRNA_639 0.57 -0.2
1,535,717 - 9007 mRNA_639 0.57 -0.0
1,535,724 + 9007 mRNA_639 0.58 -0.9
1,535,750 - 9007 mRNA_639 0.60 0.1
1,535,833 - 9007 mRNA_639 0.66 -0.7
1,535,849 + 9007 mRNA_639 0.67 1.5
1,535,859 - 9007 mRNA_639 0.68 0.2
1,535,870 + 9007 mRNA_639 0.69 0.4
1,536,177 - -0.4
1,536,441 - 1.3
1,536,748 - 9008 mRNA_640 0.15 1.3
1,536,874 - 9008 mRNA_640 0.22 -0.3
1,537,121 - 9008 mRNA_640 0.36 1.4
1,537,748 - 9008 mRNA_640 0.71 2.2
1,538,057 - 9008 mRNA_640 0.88 1.1
1,538,181 - 1.3
1,538,200 + 0.7
1,538,326 + 0.3
1,538,364 + 1.3
1,538,365 + -0.5
1,538,647 - -0.3
1,538,654 + -0.9