Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_557

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_556: 8924 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 1322822 to 1323921 8924 mRNA_557: 8925 - HMMPfam-Ras association (RalGDS/AF-6) domain-PF00788,ProSiteProfiles-Ras-associating (RA) domain profile.-PS50200,SMART-Ras association (RalGDS/AF-6) domain-SM00314,SUPERFAMILY--SSF54236, at 1324650 to 1329010 8925 mRNA_558: 8926 - HMMPfam-SH3 domain-PF00018,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 1329845 to 1332752 8926

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,323,747 + 8924 mRNA_556 0.84 -1.0
1,323,754 + 8924 mRNA_556 0.85 -1.0
1,323,894 + 0.3
1,324,074 + 0.2
1,324,359 + 0.3
1,324,364 + 0.1
1,324,375 + -0.5
1,324,386 - 0.1
1,324,394 + -3.5
1,324,479 - -0.3
1,324,556 + -0.2
1,324,670 + -0.0
1,324,935 + -0.1
1,325,091 - 8925 mRNA_557 0.10 0.4
1,325,894 - 8925 mRNA_557 0.29 0.1
1,326,013 - 8925 mRNA_557 0.31 0.8
1,326,187 - 8925 mRNA_557 0.35 1.2
1,326,577 + 8925 mRNA_557 0.44 -0.3
1,326,618 + 8925 mRNA_557 0.45 0.0
1,326,848 + 8925 mRNA_557 0.50 0.5
1,327,158 - 8925 mRNA_557 0.58 -0.5