Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_466

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_465: 8833 - K10858 PMS2 DNA mismatch repair protein PMS2, at 1079162 to 1083033 8833 mRNA_466: 8834 - Hypothetical Protein, at 1083366 to 1084523 8834 mRNA_467: 8835 - K07748 E1.1.1.170, NSDHL, ERG26 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating), at 1084850 to 1086342 8835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,082,555 - 8833 mRNA_465 0.88 -0.1
1,082,608 + 8833 mRNA_465 0.89 0.3
1,082,633 + 8833 mRNA_465 0.90 0.2
1,082,787 - -0.6
1,082,796 - -0.3
1,082,799 - -0.2
1,082,804 + 0.7
1,082,837 - -0.2
1,082,954 - 0.2
1,082,955 + -0.4
1,082,958 - -0.2
1,083,402 + 0.3
1,083,499 + 8834 mRNA_466 0.11 -0.5
1,083,554 - 8834 mRNA_466 0.16 1.0
1,083,834 - 8834 mRNA_466 0.40 0.6
1,083,838 + 8834 mRNA_466 0.41 -0.2
1,083,967 + 8834 mRNA_466 0.52 -0.9
1,084,126 + 8834 mRNA_466 0.66 1.5
1,084,129 + 8834 mRNA_466 0.66 -0.1
1,084,367 + 8834 mRNA_466 0.86 -1.4
1,084,428 + 0.2
1,084,518 - -0.1
1,084,561 + -0.2
1,084,573 + -0.6
1,084,696 - -0.9
1,084,699 - -0.0
1,084,711 - 0.8
1,084,716 - 0.3
1,084,718 + 0.8
1,084,721 + 0.3
1,084,728 - 1.1
1,084,729 + 0.8
1,084,729 + -0.7