Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_419

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976232 to 979073 8786 mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979163 to 981247 8787 mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981514 to 982786 8788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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978,189 + 8786 mRNA_418 0.69 0.1
978,226 + 8786 mRNA_418 0.70 0.1
978,300 - 8786 mRNA_418 0.73 -0.4
978,782 - 8786 mRNA_418 0.90 -0.3
979,436 + 8787 mRNA_419 0.13 0.4
979,436 + 8787 mRNA_419 0.13 0.7
979,674 + 8787 mRNA_419 0.25 -0.3
979,717 - 8787 mRNA_419 0.27 0.1
979,853 + 8787 mRNA_419 0.33 -0.7
980,002 + 8787 mRNA_419 0.40 1.0
980,280 + 8787 mRNA_419 0.54 -0.5
980,578 - 8787 mRNA_419 0.68 -0.5
980,696 - 8787 mRNA_419 0.74 0.2
980,702 + 8787 mRNA_419 0.74 0.2
980,996 + 8787 mRNA_419 0.88 0.6
981,004 - 8787 mRNA_419 0.88 -1.8
981,013 - 8787 mRNA_419 0.89 1.2
981,135 + 0.1
981,140 + -0.2
981,141 - 0.2
981,147 + 0.9
981,156 - -0.2
981,158 + -1.1
981,306 + -0.2
981,306 + 0.5
981,440 + -0.2
981,589 + -0.6
981,631 - -1.3
981,875 + 8788 mRNA_420 0.28 0.9
981,882 - 8788 mRNA_420 0.29 1.2
981,984 - 8788 mRNA_420 0.37 -0.4