Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_404

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_403: 8771 - Hypothetical Protein, at 937327 to 938664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939095 to 942093 8772 mRNA_405: 8773 - KOG4563 Cell cycle-regulated histone H1-binding protein, at 942527 to 943923 8773

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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938,188 - 8771 mRNA_403 0.64 -0.3
938,327 - 8771 mRNA_403 0.75 -0.6
938,351 - 8771 mRNA_403 0.77 0.4
938,481 + 8771 mRNA_403 0.86 0.7
938,532 - -0.2
938,545 + -0.4
938,621 + -0.2
938,654 + 0.3
939,082 - 0.7
939,087 + 0.2
939,114 + -1.1
939,190 + 0.2
939,393 + 0.9
939,592 - 8772 mRNA_404 0.17 0.5
940,557 + 8772 mRNA_404 0.49 -0.1
940,767 - 8772 mRNA_404 0.56 0.8
940,870 - 8772 mRNA_404 0.59 -0.6
940,893 - 8772 mRNA_404 0.60 -0.7
941,120 + 8772 mRNA_404 0.68 1.0
941,252 + 8772 mRNA_404 0.72 0.9
941,513 - 8772 mRNA_404 0.81 -0.9
941,543 + 8772 mRNA_404 0.82 -0.0
941,677 - 8772 mRNA_404 0.86 0.3
941,927 + -1.2
941,940 + -0.0
941,973 + -0.9
941,973 - -1.4
941,978 + 0.7
942,098 - 1.5
942,116 + 0.7
942,123 - 0.2
942,123 + -1.1
942,125 + 0.4
942,128 + -0.8
942,132 - -0.4
942,146 + 0.7
942,165 + -0.7
942,174 + 0.3
942,175 - -0.4
942,179 + 0.4
942,181 + -1.0
942,196 + -0.2
942,202 + 0.4
942,206 + 0.4
942,208 - 0.9
942,209 + -0.3
942,210 + -0.3
942,211 + 0.6
942,225 - -1.1
942,242 + -0.3