Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_373

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864831 to 866823 8740 mRNA_373: 8741 - KOG2542 Uncharacterized conserved protein (YdiU family), at 866989 to 869456 8741 mRNA_374: 8742 - Hypothetical Protein, at 869694 to 870348 8742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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866,565 - 8740 mRNA_372 0.87 0.7
866,689 - 0.7
866,694 - 1.3
866,701 + -0.1
866,710 - -0.1
866,715 + -0.6
866,723 + -1.0
866,725 + 2.3
866,856 - 0.3
866,857 + -0.7
866,861 + 0.1
866,862 + 0.2
866,866 - 0.5
866,871 + 1.4
866,872 - 0.3
866,872 - -0.4
866,872 - 0.7
866,872 - -0.1
866,874 + -0.3
866,878 + -0.1
866,883 - 1.3
866,890 - 0.4
866,894 + -0.7
867,004 - 1.3
867,014 - 1.4
867,015 - -0.3
867,020 + -0.8
867,022 - 0.3
867,027 - 0.6
867,030 - -0.2
867,034 + 0.1
867,038 + -0.1
867,043 - 0.8
867,054 - 0.1
867,162 + 0.7
867,181 - 0.3
867,451 - 8741 mRNA_373 0.19 -0.0
867,484 + 8741 mRNA_373 0.20 -0.4
867,647 - 8741 mRNA_373 0.27 -0.8
867,905 + 8741 mRNA_373 0.37 -0.6
867,919 + 8741 mRNA_373 0.38 -0.2
868,081 + 8741 mRNA_373 0.44 -2.0
868,179 - 8741 mRNA_373 0.48 0.1
868,351 + 8741 mRNA_373 0.55 -0.3
868,369 - 8741 mRNA_373 0.56 -1.2
868,643 + 8741 mRNA_373 0.67 0.7
868,812 + 8741 mRNA_373 0.74 2.0
868,928 - 8741 mRNA_373 0.79 0.3
869,218 + -0.2
869,383 + 0.1
869,795 + 8742 mRNA_374 0.15 1.9
870,258 - 8742 mRNA_374 0.86 0.3
870,366 - 0.5
870,385 - -1.3
870,386 + -0.6
870,402 - -0.1
870,409 - -0.5