Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_235

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577218 to 578179 8602 mRNA_235: 8603 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 578724 to 580674 8603 mRNA_236: 8604 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 580930 to 582126 8604

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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577,982 - 8602 mRNA_234 0.79 0.3
578,093 - 1.7
578,248 - 0.2
578,250 - 0.7
578,314 + -0.9
578,378 + 2.1
578,379 - 0.8
578,383 - -0.8
578,400 - 0.1
578,543 - -0.3
578,555 - -0.1
579,163 - 8603 mRNA_235 0.23 -0.4
579,418 - 8603 mRNA_235 0.36 0.7
579,872 + 8603 mRNA_235 0.59 0.2
580,148 - 8603 mRNA_235 0.73 0.6
580,168 + 8603 mRNA_235 0.74 1.3
580,288 + 8603 mRNA_235 0.80 1.4
580,739 + -2.1
580,777 + 0.2
580,779 - 0.3
580,780 - 0.9
580,788 + 0.1
580,789 + 0.7
580,927 + 1.4
581,073 - 8604 mRNA_236 0.12 0.5
581,493 - 8604 mRNA_236 0.47 0.8
581,642 - 8604 mRNA_236 0.59 -0.3