Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_172

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419232 to 420600 8539 mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421100 to 422861 8540 mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423243 to 425969 8541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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420,603 + 1.2
420,752 - -0.5
420,908 - 0.7
420,917 + -1.2
421,060 + 0.2
421,356 - 8540 mRNA_172 0.15 -0.6
421,367 + 8540 mRNA_172 0.15 0.2
421,503 + 8540 mRNA_172 0.23 0.4
421,657 + 8540 mRNA_172 0.32 0.3
421,662 + 8540 mRNA_172 0.32 -0.6
421,823 - 8540 mRNA_172 0.41 0.1
421,971 - 8540 mRNA_172 0.49 0.9
422,011 - 8540 mRNA_172 0.52 0.6
422,372 - 8540 mRNA_172 0.72 0.9
422,392 + 8540 mRNA_172 0.73 0.1
422,666 - 8540 mRNA_172 0.89 1.5
422,678 + 8540 mRNA_172 0.90 0.5
422,822 + -0.8
423,118 - 1.3
423,758 - 8541 mRNA_173 0.19 0.0