Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_149

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372141 to 374463 8516 mRNA_149: 8517 - Hypothetical Protein, at 374872 to 375333 8517 mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375753 to 378108 8518

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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374,013 - 8516 mRNA_148 0.81 1.3
374,153 + 8516 mRNA_148 0.87 0.6
374,189 - 8516 mRNA_148 0.88 0.3
374,197 + 8516 mRNA_148 0.89 1.3
374,342 + -0.3
374,366 - 1.0
374,373 - 1.2
374,381 - -0.3
374,409 - -0.5
374,491 + 1.0
374,495 - -0.2
374,513 - 0.6
374,513 - -0.8
374,521 - -0.1
374,533 + 0.1
374,533 - 0.6
374,541 - -0.9
374,560 + -1.1
374,566 - -0.1
374,570 - 0.3
374,575 + 0.2
374,594 + 0.6
374,594 + 0.9
374,614 + -0.5
374,621 - -2.2
374,627 + 0.5
374,627 + 1.1
374,639 - -0.4
374,659 - 0.2
374,659 - -0.2
374,659 - -0.2
374,663 - -0.7
374,664 + -2.1
374,668 - -1.3
374,671 - 0.1
374,675 + -0.4
374,683 + -0.6
374,684 + 0.4
374,684 + 0.2
374,685 + 0.4
374,687 + -0.2
374,695 - 0.0
374,696 + 0.0
374,719 - 1.5
374,726 + 0.2
374,741 + -0.2
374,759 - 0.1
374,820 + 0.0
374,824 - 1.7
374,942 - 8517 mRNA_149 0.15 -0.1
374,983 + 8517 mRNA_149 0.24 0.6
375,100 + 8517 mRNA_149 0.49 1.0
375,131 + 8517 mRNA_149 0.56 0.6
375,138 + 8517 mRNA_149 0.58 0.6
375,140 + 8517 mRNA_149 0.58 -0.7
375,249 + 8517 mRNA_149 0.82 0.3
375,258 + 8517 mRNA_149 0.84 0.1
376,011 + 8518 mRNA_150 0.11 -0.4
376,300 - 8518 mRNA_150 0.23 0.8