Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_144

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365672 to 367146 8513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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357,702 + 8511 mRNA_143 0.87 0.5
357,818 - 0.1
357,821 - -0.3
357,848 - 0.1
357,851 - -0.2
357,968 + 0.1
357,976 + -1.4
357,977 - -0.7
357,987 - 0.8
357,987 + 1.0
357,994 + 1.5
357,997 - -0.5
358,000 - -0.9
358,000 - 0.0
358,005 - -0.2
358,005 - 1.9
358,006 - -0.5
358,006 + 0.4
358,079 - -0.3
358,123 - 0.4
358,126 - 0.4
358,131 - -0.2
358,133 - 0.7
358,133 - 0.4
358,134 - -1.3
358,141 + -0.3
358,151 + 0.2
358,156 + 0.0
358,157 + 1.2
358,157 + 1.7
358,161 + -1.4
358,254 + 0.3
358,281 - -1.1
358,290 - 0.2
358,314 + 0.3
358,432 - -0.1
358,470 - -1.6
358,513 + 0.7
358,604 - -0.1
358,609 + -0.1
358,627 - -0.1
358,640 + -1.4
358,789 + 1.6
359,212 + 8512 mRNA_144 0.12 0.2
359,509 - 8512 mRNA_144 0.16 0.8
359,921 - 8512 mRNA_144 0.22 0.1
360,046 - 8512 mRNA_144 0.24 1.1
360,355 + 8512 mRNA_144 0.28 0.2
360,470 - 8512 mRNA_144 0.30 0.4
360,491 + 8512 mRNA_144 0.30 -0.4
360,492 - 8512 mRNA_144 0.30 0.5
360,657 - 8512 mRNA_144 0.33 -0.2
361,622 + 8512 mRNA_144 0.46 -0.3
361,839 - 8512 mRNA_144 0.50 1.0
361,956 + 8512 mRNA_144 0.51 0.5
361,962 + 8512 mRNA_144 0.51 0.0
362,349 + 8512 mRNA_144 0.57 0.8
362,496 - 8512 mRNA_144 0.59 -0.3
362,591 - 8512 mRNA_144 0.60 0.7
362,625 + 8512 mRNA_144 0.61 -0.5
362,930 - 8512 mRNA_144 0.65 -1.8
362,989 - 8512 mRNA_144 0.66 -1.1
362,990 - 8512 mRNA_144 0.66 -0.5
363,040 - 8512 mRNA_144 0.67 -2.4
363,099 - 8512 mRNA_144 0.67 1.1
363,249 - 8512 mRNA_144 0.70 -0.7
363,970 + 8512 mRNA_144 0.80 0.3
364,014 + 8512 mRNA_144 0.80 0.2
364,443 + 8512 mRNA_144 0.87 -0.4
364,446 + 8512 mRNA_144 0.87 -2.3
364,591 + 8512 mRNA_144 0.89 -0.7
364,603 + 8512 mRNA_144 0.89 0.3
365,192 + 0.2
365,197 + -0.2
365,314 + 0.2
365,440 + 0.7
365,465 - 0.0
365,472 - -0.1
365,517 + -0.5
365,617 + -0.2
365,631 + 1.0
365,759 - 0.3
365,759 - -2.6
365,766 + 2.2