Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_143

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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355,374 - 0.9
355,403 - 0.0
355,418 - 1.2
355,442 - 0.0
355,531 + -0.1
355,647 + 1.4
355,755 - -0.8
355,785 + 0.6
355,804 + -0.4
356,035 + 0.8
356,179 - 0.4
356,187 - 1.6
356,537 - 8511 mRNA_143 0.21 0.1
356,609 - 8511 mRNA_143 0.25 0.1
356,663 + 8511 mRNA_143 0.28 -0.3
356,682 + 8511 mRNA_143 0.29 0.3
357,702 + 8511 mRNA_143 0.87 0.5
357,818 - 0.1
357,821 - -0.3
357,848 - 0.1
357,851 - -0.2
357,968 + 0.1
357,976 + -1.4
357,977 - -0.7
357,987 - 0.8
357,987 + 1.0
357,994 + 1.5
357,997 - -0.5
358,000 - -0.9
358,000 - 0.0
358,005 - -0.2
358,005 - 1.9
358,006 - -0.5
358,006 + 0.4
358,079 - -0.3
358,123 - 0.4
358,126 - 0.4
358,131 - -0.2
358,133 - 0.7
358,133 - 0.4
358,134 - -1.3
358,141 + -0.3
358,151 + 0.2
358,156 + 0.0
358,157 + 1.2
358,157 + 1.7
358,161 + -1.4
358,254 + 0.3
358,281 - -1.1
358,290 - 0.2
358,314 + 0.3
358,432 - -0.1
358,470 - -1.6
358,513 + 0.7
358,604 - -0.1
358,609 + -0.1
358,627 - -0.1
358,640 + -1.4
358,789 + 1.6