Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_127

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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303,311 - 1.5
303,311 - 0.7
303,325 + -0.4
303,439 - -0.8
303,444 + -0.2
303,570 - -0.5
303,840 - 0.7
304,007 - -0.5
304,333 + 0.1
304,439 - 0.3
304,603 + 8495 mRNA_127 0.12 -1.4
304,933 - 8495 mRNA_127 0.23 0.9
305,053 - 8495 mRNA_127 0.27 -0.2
305,064 + 8495 mRNA_127 0.27 -0.7
305,450 - 8495 mRNA_127 0.41 0.3
305,468 - 8495 mRNA_127 0.41 0.1
305,566 - 8495 mRNA_127 0.44 -0.0
305,852 + 8495 mRNA_127 0.54 -0.8
306,191 - 8495 mRNA_127 0.66 1.2
306,337 + 8495 mRNA_127 0.71 0.4
306,834 - 8495 mRNA_127 0.87 0.2
306,877 - 8495 mRNA_127 0.89 -0.3
306,913 + 0.2
307,185 - -0.0
307,205 - 0.4
307,285 + 1.0
307,305 - 0.4
307,482 + 0.4
307,487 + -0.4
307,515 + 0.8
307,600 - 0.3
307,629 + -0.0
307,634 + -1.0
307,719 + 2.8
307,785 - -0.3
307,886 - -0.6
308,051 + 1.1
308,064 - -0.2
308,146 + 8496 mRNA_128 0.12 0.7