Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_113

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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266,128 - 8480 mRNA_112 0.70 0.5
266,165 - 8480 mRNA_112 0.71 -1.7
266,180 + 8480 mRNA_112 0.72 -0.4
266,296 - 8480 mRNA_112 0.76 0.5
266,589 - 8480 mRNA_112 0.86 -0.2
266,739 - -0.3
266,777 + -0.7
266,894 - -0.1
266,900 + 0.2
266,900 + 0.0
267,130 - 8481 mRNA_113 0.13 -0.0
267,140 - 8481 mRNA_113 0.16 -1.0
267,314 - 8481 mRNA_113 0.71 1.0
267,332 + 8481 mRNA_113 0.77 -0.3
267,340 - 8481 mRNA_113 0.79 1.4
267,482 + -0.6
267,499 + -0.3
267,885 + -0.1
267,886 - -1.4
268,053 - 8482 mRNA_114 0.13 0.8
268,059 + 8482 mRNA_114 0.13 0.7