Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_94

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219909 to 221427 8461 mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221579 to 223787 8462 mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224693 to 228325 8463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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221,592 - -0.4
221,611 + -1.0
221,664 + 1.2
221,749 + -0.7
222,058 + 8462 mRNA_94 0.22 0.1
222,064 - 8462 mRNA_94 0.22 0.8
222,611 - 8462 mRNA_94 0.47 2.2
222,772 + 8462 mRNA_94 0.54 -0.2
222,883 - 8462 mRNA_94 0.59 0.5
223,063 - 8462 mRNA_94 0.67 -0.1
223,344 - 8462 mRNA_94 0.80 -0.2
223,668 - 1.2
223,938 - 0.3
223,947 + 0.3
223,958 - 0.1
223,972 - 0.6
223,985 + -1.0
223,989 + 0.0
223,991 + -0.4
223,993 + -0.8
223,999 - 0.1
224,011 - 0.7
224,011 - -0.1
224,032 - -1.0
224,035 + -0.5
224,084 - -0.4
224,099 + -0.9
224,105 + -0.2
224,111 + -0.2
224,145 - 1.0
224,232 + 1.8
224,240 + -0.6
224,254 - 0.3
224,268 + 1.9
224,275 - 1.2
224,279 + -0.0
224,284 - -0.4
224,296 + -0.1
224,332 - 0.2
224,334 - 0.1
224,339 + -0.4
224,348 - 1.4
224,356 + -0.3
224,356 - -0.4
224,359 + -0.1
224,361 + 0.2
224,362 + -0.8
224,365 - -0.2
224,369 + -0.3
224,369 + -0.2
224,376 - 0.8
224,381 - -0.1
224,383 + 1.3
224,387 + -0.1
224,387 + 0.4
224,393 - 0.6
224,410 - -0.4
224,413 + 0.6
224,448 - -0.4
224,451 + -0.4
224,451 - -0.6
224,453 + -0.1
224,456 + 0.2
224,456 + -0.3
224,458 - 0.4
224,488 + 1.6
224,614 + 0.1
224,720 + 0.1