Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_34

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_33: 8401 - HMMPfam-Myosin-binding striated muscle assembly central-PF11701,SUPERFAMILY--SSF48371, at 79205 to 81384 8401 mRNA_34: 8402 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 81530 to 84325 8402 mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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80,616 - 8401 mRNA_33 0.65 1.9
80,626 + 8401 mRNA_33 0.65 2.3
80,666 - 8401 mRNA_33 0.67 0.4
80,977 + 8401 mRNA_33 0.81 0.6
81,101 + 8401 mRNA_33 0.87 0.2
81,113 + 8401 mRNA_33 0.88 1.1
81,114 - 8401 mRNA_33 0.88 -0.6
81,221 - 0.2
81,232 - -0.1
81,251 - 1.3
81,260 - 0.6
81,275 - -0.4
81,278 + 1.2
81,407 - -0.2
82,155 + 8402 mRNA_34 0.22 -2.2
83,768 - 8402 mRNA_34 0.80 -2.2
84,344 + -0.8
84,348 + 0.8
84,391 - 0.2
84,470 + 0.4
84,625 - -0.7
84,639 - 0.2
84,669 - 0.3
84,751 - -0.5
84,771 + 0.2
84,804 - 0.4
84,918 + -0.6
84,943 + 1.0
84,947 - 0.3
85,016 - 0.0
85,016 - 0.9
85,167 - 8403 mRNA_35 0.18 -0.8
85,238 + 8403 mRNA_35 0.25 -1.6