Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8155 to 10023 8371 mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372 mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12047 to 13694 8373

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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9,290 + 8371 mRNA_3 0.61 -1.1
9,293 - 8371 mRNA_3 0.61 -0.0
9,293 - 8371 mRNA_3 0.61 -0.2
9,321 + 8371 mRNA_3 0.62 -0.7
9,595 - 8371 mRNA_3 0.77 1.4
9,699 + 8371 mRNA_3 0.83 -0.2
9,699 + 8371 mRNA_3 0.83 -0.2
9,864 - -0.5
9,885 + 0.2
9,887 - -0.0
9,889 + 0.1
9,890 - -0.3
9,920 + 1.2
9,921 + 0.5
9,946 - -0.0
9,986 + 0.2
9,998 - -0.0
10,003 - 0.6
10,039 - 0.3
10,045 - -0.3
10,059 + -0.2
10,066 + -1.1
10,067 + 1.1
10,071 + 0.1
10,074 - 0.3
10,076 - 0.1
10,095 + 0.3
10,120 + 0.2
10,123 + 0.7
10,197 + 0.7
10,214 + -0.2
10,229 + -0.2
10,230 - -1.0
10,241 + 0.9
10,241 + -0.2
10,357 - -1.4
10,521 - 8372 mRNA_4 0.18 -3.7
10,663 + 8372 mRNA_4 0.27 -0.6
10,915 - 8372 mRNA_4 0.43 -0.8
11,415 - 8372 mRNA_4 0.74 0.2
11,519 - 8372 mRNA_4 0.80 -1.6
11,848 + 0.1
11,850 - 1.8
11,972 + -0.1
12,045 + 0.1
12,157 + 0.9
12,167 - 1.7
12,186 - 1.3
12,190 + -1.7
12,347 - 8373 mRNA_5 0.18 -0.4
12,460 + 8373 mRNA_5 0.25 0.1
12,560 + 8373 mRNA_5 0.31 -0.7
12,571 + 8373 mRNA_5 0.32 0.9
12,576 - 8373 mRNA_5 0.32 -0.7
12,622 - 8373 mRNA_5 0.35 0.6
12,669 + 8373 mRNA_5 0.38 -1.0
12,747 + 8373 mRNA_5 0.42 0.5