Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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595 + 0.1
609 - -0.6
637 - 0.8
651 + 0.4
654 + 0.2
659 - -0.3
663 + 0.3
672 - -0.1
673 + -0.3
685 + 1.1
725 + -0.3
790 - -0.3
791 + -0.8
798 + 0.9
798 + 0.6
804 - 1.0
821 + -2.0
860 + -0.2
899 - 1.5
916 + -0.3
939 + -0.1
957 + -1.5
975 - -0.4
976 + 0.8
996 - 1.2
1,005 + 0.7
1,005 - 0.3
1,007 - -0.3
1,052 + -1.7
1,058 + -0.7
1,070 + -1.3
1,113 - -1.7
1,115 - 0.1
1,117 + 0.1
1,207 + -0.1
1,257 + 0.9
1,285 - 0.4
1,359 - -0.3
1,422 + -0.3
1,960 + 8369 mRNA_1 0.44 -0.4
2,268 + 8369 mRNA_1 0.79 -0.9
2,361 - 8369 mRNA_1 0.89 -0.6
2,441 + 1.6
2,550 + -0.1
2,552 - 0.3
2,564 + 1.0
2,701 + -0.1
2,839 - 0.0
2,853 + 0.3
2,946 - -0.1
3,005 - -0.9
3,125 - 0.1
3,136 + -0.0