Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8402

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8401: 16769 - K16315 GSG2 serine/threonine-protein kinase haspin, at 1130370 to 1132967 16769 mRNA_8402: 16770 - K07579 K07579 putative methylase, at 1133086 to 1134230 16770 mRNA_8403: 16771 - K08829 MAK male germ cell-associated kinase, at 1134667 to 1138585 16771

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,132,423 - 16769 mRNA_8401 0.79 0.4
1,132,689 - 16769 mRNA_8401 0.89 0.1
1,132,694 + 16769 mRNA_8401 0.89 -0.8
1,132,694 + 16769 mRNA_8401 0.89 -0.9
1,132,760 - -0.7
1,132,863 - 0.8
1,132,988 - 0.1
1,133,103 + 0.6
1,133,123 - -0.6
1,133,131 + -1.5
1,133,150 - 0.4
1,133,165 + 0.0
1,133,167 + -0.7
1,133,189 + 0.3
1,133,398 + 16770 mRNA_8402 0.27 0.5
1,133,400 - 16770 mRNA_8402 0.27 -0.4
1,133,454 + 16770 mRNA_8402 0.32 -0.5
1,133,943 + 16770 mRNA_8402 0.75 0.3
1,133,947 - 16770 mRNA_8402 0.75 0.9
1,133,987 + 16770 mRNA_8402 0.79 0.2
1,134,006 - 16770 mRNA_8402 0.80 0.0
1,134,089 + 16770 mRNA_8402 0.88 0.6
1,134,142 - 0.3
1,134,152 - 0.4
1,134,157 - 1.3
1,134,302 + 0.6
1,134,446 + 0.5
1,134,454 + 0.3
1,134,475 + -0.2
1,134,484 - 0.9
1,134,613 + -0.1
1,134,744 - 1.2
1,134,772 + 0.0
1,135,010 + 0.7