Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8287

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8286: 16654 - HMMPfam-GATA zinc finger-PF00320,ProSiteProfiles-GATA-type zinc finger domain profile.-PS50114,SMART-zinc finger binding to DNA consensus sequence [AT]GATA[AG]-SM00401,SUPERFAMILY--SSF57716, at 845921 to 849990 16654 mRNA_8287: 16655 - K10245 ELO2 fatty acid elongase 2, at 850853 to 852932 16655 mRNA_8288: 16656 - KOG4135 Predicted phosphoglucosamine acetyltransferase, at 853502 to 854309 16656

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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850,218 - 0.8
850,244 - -0.5
850,246 - -0.0
850,373 - -0.4
850,373 - 0.5
850,387 + 1.8
850,387 - -0.0
850,389 + 0.5
850,391 + -0.9
850,392 - -0.4
850,402 + 0.9
850,403 + -0.6
850,405 + -0.3
850,406 - -0.1
850,407 + 0.1
850,412 + 0.9
850,414 + -1.1
850,414 + 1.4
850,419 - 0.4
850,419 - -0.4
850,420 + 0.3
850,420 + 2.1
850,422 - 0.2
850,424 + -2.1
850,440 + 2.0
850,456 + -0.7
850,497 + -0.4
850,497 - 0.5
850,510 + -1.6
850,510 + 0.2
850,522 + -0.3
850,525 - -0.4
850,527 + 0.9
850,530 + -1.6
850,531 - -0.6
850,539 - 0.3
850,676 - 0.0
850,686 - 2.2
850,793 - -0.4
851,087 - 16655 mRNA_8287 0.11 1.9
851,239 - 16655 mRNA_8287 0.19 0.6
851,266 - 16655 mRNA_8287 0.20 -0.3
851,269 - 16655 mRNA_8287 0.20 -0.2
851,275 + 16655 mRNA_8287 0.20 -0.2
853,395 + -1.5
853,710 + 16656 mRNA_8288 0.26 -0.1
853,762 + 16656 mRNA_8288 0.32 0.5