Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8263

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792361 to 796882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797648 to 800551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800850 to 802295 16632

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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796,756 + 1.9
796,770 + -0.3
796,773 - -0.8
796,793 - 0.1
796,809 + 1.0
796,906 - -1.2
796,906 + -0.3
796,926 + 0.0
796,939 + 0.2
796,944 - -0.5
796,956 + -0.2
797,053 - 0.1
797,057 - -0.2
797,082 - 0.0
797,084 + -0.6
797,087 - 0.4
797,090 + -0.0
797,112 - -0.4
797,221 + 0.1
797,222 + 1.5
797,223 - -0.3
797,238 - 1.9
797,251 - -0.7
797,275 + -0.0
797,283 - -0.2
797,284 + -0.1
797,288 - 1.3
797,300 + -0.0
797,301 + 1.5
797,319 - 0.2
797,321 - -0.6
797,356 + 0.8
797,360 - 0.4
797,361 - -0.8
797,376 - 0.5
797,377 + 0.4
797,389 - -0.1
797,408 + -0.4
797,413 - 0.0
797,415 + 0.0
797,424 + 0.1
797,714 - -0.7
797,863 - -0.7
797,872 - 0.1
797,890 + -0.6
798,027 + 16631 mRNA_8263 0.13 0.7
798,299 - 16631 mRNA_8263 0.22 -0.0
798,593 - 16631 mRNA_8263 0.33 1.3
798,847 + 16631 mRNA_8263 0.41 -1.0
799,171 - 16631 mRNA_8263 0.52 0.1
799,718 + 16631 mRNA_8263 0.71 -0.7
800,021 - 16631 mRNA_8263 0.82 1.1
800,035 + 16631 mRNA_8263 0.82 -0.3
800,188 + 16631 mRNA_8263 0.87 -0.3
800,300 - -0.7
800,626 - 0.6
800,648 + 0.5
801,024 + 16632 mRNA_8264 0.12 0.2
801,195 + 16632 mRNA_8264 0.24 -0.3
801,226 - 16632 mRNA_8264 0.26 -0.8