Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8168

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580110 to 581600 16536 mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582440 to 584866 16537

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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579,181 - 0.0
579,182 - 0.0
579,184 + 0.3
579,187 - 0.7
579,199 + -0.7
579,316 - -1.6
579,324 - -0.2
579,341 + 0.1
579,620 - -0.2
579,643 - -1.2
579,779 + 0.1
579,816 + -1.1
580,071 + 0.9
580,654 - 16536 mRNA_8168 0.36 0.0
580,662 - 16536 mRNA_8168 0.37 -0.4
580,664 + 16536 mRNA_8168 0.37 0.1
580,797 + 16536 mRNA_8168 0.46 0.2
580,828 + 16536 mRNA_8168 0.48 -0.2
580,966 - 16536 mRNA_8168 0.57 -0.3
580,994 + 16536 mRNA_8168 0.59 1.6
581,018 - 16536 mRNA_8168 0.61 0.3
581,064 + 16536 mRNA_8168 0.64 0.8
581,103 + 16536 mRNA_8168 0.67 -0.1
581,118 + 16536 mRNA_8168 0.68 -0.7
581,127 - 16536 mRNA_8168 0.68 -0.5
581,182 + 16536 mRNA_8168 0.72 -0.1
581,184 - 16536 mRNA_8168 0.72 0.3
581,191 - 16536 mRNA_8168 0.73 -0.8
581,213 - 16536 mRNA_8168 0.74 1.4
581,267 - 16536 mRNA_8168 0.78 -0.9
581,410 + 16536 mRNA_8168 0.87 0.6
581,481 - -0.3
581,656 - 0.2
581,661 - 0.1
581,779 + -0.0
581,788 + -1.1
581,874 - -0.0
581,914 - -0.1
581,927 + -0.6
581,935 + 0.1
581,946 + 0.2
582,060 - 0.8
582,067 + -1.0
582,073 + -0.6
582,222 + -0.3
582,243 - -0.6
582,252 - 1.2
582,353 + -1.2
582,354 - 0.0
582,389 + 0.4