Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8060

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8059: 16427 - HMMPfam-Translation initiation factor IF-3, C-terminal domain-PF00707,HMMPfam-Translation initiation factor IF-3, N-terminal domain-PF05198,SUPERFAMILY--SSF54364,SUPERFAMILY--SSF55200, at 324105 to 324902 16427 mRNA_8060: 16428 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 325618 to 328246 16428 mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329115 to 329494 16429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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325,074 - -0.3
325,242 + 0.2
325,408 + -0.3
325,415 + 0.5
325,417 - -0.1
325,420 - -0.2
325,422 - 0.8
325,452 + -0.8
325,481 + 1.2
325,487 - -0.5
325,488 - 1.0
325,492 - 0.6
325,494 - 0.1
325,505 + 0.4
325,506 + -0.5
325,508 - -0.7
325,511 - -0.3
325,520 + -0.1
325,532 + -1.2
325,558 - 0.5
325,561 + -0.7
325,565 + -0.6
325,567 + -0.2
325,568 + -1.8
325,575 - 0.1
325,584 - 0.1
325,724 - 0.5
325,730 - 0.5
325,734 + -0.2
325,737 + 0.6
325,737 - -0.1
325,738 + 0.4
325,739 + -0.2
325,744 + -0.0
325,747 - -0.1
325,865 - 1.0
325,880 - 0.2
325,886 - 16428 mRNA_8060 0.10 0.9
325,898 + 16428 mRNA_8060 0.11 0.6
326,005 + 16428 mRNA_8060 0.15 0.0
326,033 + 16428 mRNA_8060 0.16 -0.0
326,034 - 16428 mRNA_8060 0.16 0.0
326,045 + 16428 mRNA_8060 0.16 0.3
326,185 - 16428 mRNA_8060 0.22 0.4
326,224 + 16428 mRNA_8060 0.23 -0.6
326,902 + 16428 mRNA_8060 0.49 0.5
326,920 - 16428 mRNA_8060 0.50 -0.3
327,243 + 16428 mRNA_8060 0.62 -0.3
327,362 + 16428 mRNA_8060 0.66 -0.1
327,508 + 16428 mRNA_8060 0.72 1.4
327,529 - 16428 mRNA_8060 0.73 -0.4
327,617 - 16428 mRNA_8060 0.76 -0.7
327,618 + 16428 mRNA_8060 0.76 -0.2
327,662 - 16428 mRNA_8060 0.78 0.1
327,708 + 16428 mRNA_8060 0.79 0.8
328,227 - 0.1
328,396 - 0.5
328,530 + -0.1
328,827 - 0.3
328,852 - -0.6