Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8027

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394 mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243826 to 244717 16395 mRNA_8028: 16396 - K06100 SYMPK symplekin, at 244729 to 248815 16396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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242,890 - 16394 mRNA_8026 0.83 0.6
243,022 - 16394 mRNA_8026 0.86 0.4
243,065 - 16394 mRNA_8026 0.88 1.5
243,107 - 16394 mRNA_8026 0.89 -0.9
243,115 + 16394 mRNA_8026 0.89 0.1
243,180 + 0.4
243,214 + 0.7
243,245 - 1.2
243,255 + -0.3
243,320 + -1.8
243,341 + 0.8
243,356 - -0.2
243,503 - 0.9
243,505 + 0.4
243,515 - 1.2
243,553 + -0.2
243,659 + 0.1
243,827 - 0.8
243,974 - 16395 mRNA_8027 0.17 -0.6
243,976 + 16395 mRNA_8027 0.17 0.1
243,978 - 16395 mRNA_8027 0.17 0.8
244,011 - 16395 mRNA_8027 0.21 0.2
244,081 - 16395 mRNA_8027 0.29 0.3
244,106 - 16395 mRNA_8027 0.31 -0.2
244,141 - 16395 mRNA_8027 0.35 0.1
244,685 - 0.3
244,700 - -0.4
244,837 - 0.7