Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8010

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204199 to 205713 16377 mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206291 to 207434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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205,797 - -0.3
205,808 - -0.0
205,821 - 0.1
205,965 - 1.7
205,969 + 0.2
205,970 + -0.5
205,984 + 1.2
205,999 - 0.9
206,007 + -0.8
206,009 + 0.0
206,087 - -0.4
206,106 - -0.1
206,125 - -0.2
206,172 + -0.3
206,175 - 0.3
207,025 + 16378 mRNA_8010 0.64 1.1
207,296 - 16378 mRNA_8010 0.88 0.5
207,492 - 0.0
207,505 + -0.6
207,506 + 1.0
207,645 - 0.8
207,651 + -0.6
208,100 - 16379 mRNA_8011 0.24 0.3