Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8007

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8006: 16374 - Hypothetical Protein, at 197115 to 197847 16374 mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198335 to 201051 16375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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197,380 - 16374 mRNA_8006 0.36 0.2
197,384 - 16374 mRNA_8006 0.37 0.4
197,512 - 16374 mRNA_8006 0.54 0.7
197,544 + 16374 mRNA_8006 0.59 0.6
197,556 - 16374 mRNA_8006 0.60 0.9
197,655 + 16374 mRNA_8006 0.74 0.9
197,846 + 1.3
197,971 - -1.1
197,974 - 0.5
197,976 - -0.7
197,986 + 0.1
197,986 + 0.1
197,992 - -0.7
198,003 - -0.1
198,013 + 0.8
198,122 + 0.4
198,126 - -0.7
198,186 + 0.6
198,825 + 16375 mRNA_8007 0.18 0.1
198,870 - 16375 mRNA_8007 0.20 -2.1
198,874 + 16375 mRNA_8007 0.20 0.4
198,875 - 16375 mRNA_8007 0.20 0.4
198,993 + 16375 mRNA_8007 0.24 -0.4
198,999 - 16375 mRNA_8007 0.24 -0.3
199,220 + 16375 mRNA_8007 0.33 -0.4
199,612 + 16375 mRNA_8007 0.47 -0.3
199,628 - 16375 mRNA_8007 0.48 -0.0
199,845 + 16375 mRNA_8007 0.56 0.7
199,861 - 16375 mRNA_8007 0.56 -0.3
199,931 - 16375 mRNA_8007 0.59 -0.2
200,013 - 16375 mRNA_8007 0.62 -0.0
200,016 + 16375 mRNA_8007 0.62 -0.1
200,036 - 16375 mRNA_8007 0.63 -0.4
200,321 + 16375 mRNA_8007 0.73 -1.0
200,470 + 16375 mRNA_8007 0.79 1.0
200,479 + 16375 mRNA_8007 0.79 0.2
200,616 - 16375 mRNA_8007 0.84 -1.1
200,757 + 16375 mRNA_8007 0.89 0.1
200,787 - -0.7
200,909 - -1.2
200,952 + 1.0
200,954 + -0.7
201,083 - 0.1
201,094 + 0.0
201,098 + -1.1
201,110 + -1.0
201,247 - 1.6
201,386 + -0.4
201,389 - 0.0
201,396 - 0.5
201,396 - 0.2
201,398 - 0.5
201,410 + -0.0
201,413 - -0.9
201,415 - 0.5
201,420 + 0.2
201,424 + 0.2
201,424 + 0.5
201,563 - 1.3
201,563 - 1.8
201,563 - 2.0
201,563 - -0.5
201,584 + 0.5
201,584 - -0.1