Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7961

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102805 to 103919 16328 mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104119 to 104997 16329 mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105517 to 106511 16330

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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103,249 + 16328 mRNA_7960 0.40 -1.2
103,249 + 16328 mRNA_7960 0.40 0.2
103,297 + 16328 mRNA_7960 0.44 0.7
103,300 + 16328 mRNA_7960 0.44 -1.7
103,303 + 16328 mRNA_7960 0.45 0.2
103,326 - 16328 mRNA_7960 0.47 -0.0
103,759 + 16328 mRNA_7960 0.86 0.4
103,808 + -1.0
103,816 - 0.5
103,945 - 1.0
103,951 + 0.4
103,951 + -1.6
103,976 + 1.6
104,044 + -1.0
104,204 - 2.0
104,257 + 16329 mRNA_7961 0.16 -0.2
104,537 + 16329 mRNA_7961 0.48 0.9
104,710 + 16329 mRNA_7961 0.67 -0.3
104,817 - 16329 mRNA_7961 0.79 0.1
104,839 - 16329 mRNA_7961 0.82 0.9
104,902 + 16329 mRNA_7961 0.89 -0.3
104,918 - 0.4
105,104 + 0.3
105,107 - 0.1
105,107 - 0.4
105,110 + 0.4
105,128 - 0.3
105,149 - 2.8
105,246 + 0.0
105,404 - -1.0
105,420 - 0.9
105,458 - -0.1
105,459 - 1.5
105,563 + 0.9
105,648 - 16330 mRNA_7962 0.13 -0.0
105,700 - 16330 mRNA_7962 0.18 0.8
105,705 + 16330 mRNA_7962 0.19 -0.1
105,722 - 16330 mRNA_7962 0.21 -1.0
105,788 - 16330 mRNA_7962 0.27 1.1
105,793 + 16330 mRNA_7962 0.28 0.2
105,964 + 16330 mRNA_7962 0.45 0.4
105,967 - 16330 mRNA_7962 0.45 0.7
105,980 + 16330 mRNA_7962 0.47 0.4